PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.3099s0010.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 194aa    MW: 21542.8 Da    PI: 9.8117
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.3099s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.21.3e-20655255
                     AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                            +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae Aa a+++a+++l+g
  SapurV1A.3099s0010.1.p  6 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEAAALAYDEAALRLKG 55
                            7********.**********94....45*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-33564IPR001471AP2/ERF domain
PROSITE profilePS5103224.764663IPR001471AP2/ERF domain
CDDcd000181.57E-19664No hitNo description
SMARTSM003804.6E-38669IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-22664IPR016177DNA-binding domain
PfamPF008471.5E-14655IPR001471AP2/ERF domain
PRINTSPR003671.1E-11718IPR001471AP2/ERF domain
PRINTSPR003671.1E-112945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
NARRRHYRGV RQRPWGKWAA EIRDPKKAAR VWLGTFETAE AAALAYDEAA LRLKGSKAKL  60
NFPERVQAGA TQLGFFSSGQ GSHTMAEPVP DHIMAPLARS RQPHEVYNPN NFQYPQFLGT  120
TAGYSFSHVM PEAPFGGETF LSPTSSSTAS SNSWPISSQQ QQQQQEELLR LSNQFGSSYN  180
SRYDPSTFKD EGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-29269169ATERF1
3gcc_A3e-29269169ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318176.23e-94hypothetical protein POPTR_0012s11030g
TrEMBLB9I4114e-94B9I411_POPTR; Uncharacterized protein
STRINGPOPTR_0012s11030.11e-93(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.14e-30ERF family protein